Physicochemical Properties of Conventional Antiparasitic Drugs Based on Lipinski’s Rule of Five

Authors

Keywords:

antiparasitic, leishmaniasis, Lipinski's rule, physicochemical properties, rule of five.

Abstract

Introduction: Infections caused by protozoan parasites and helminths are responsible for significant morbidity and mortality in both tropical and subtropical regions. In the antiparasitic drug discovery process, a number of generic criteria have been identified, including physicochemical properties that might predict oral therapy. According to them, an ideal molecule would comply with Lipinski's rule of five (RO5).

Objective: In this work, a general analysis based on physicochemical properties was performed for antiparasitic drugs for clinical use against the main parasitic protozoa and helminths of medical importance.

Methods: The chemical structure of 57 antiparasitic compounds was drawn in the Biovia draw program and the physicochemical properties were automatically improved, allowing the results to be analyzed according to Lipinski's rule.

Results: The first analysis showed that of 57 antiparasitics, 80.7% (n = 46) complied with Lipinski's rule; while amphotericin B and suramin fail 3 rules. On the other hands, among the diseases, the most critical compounds that did not meet RO5 are those recommended against leishmaniosis, with three of the drugs included in conventional therapy. Finally, although most antiparasitics are administered orally, some of these compounds fail in one or two RO5 parameters; while compounds that should be administered parenterally fail up to 3 rules.

Conclusion: In this work, we can suggest that the development of antiparasitic drugs, those that demonstrated pharmacological potential should not lose priority if the physicochemical parameters are outside the desirable range, particularly against leishmaniasis.

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References

Singh B, Varikuti S, Halsey G, Volpedo G, Hamza OM, Satoskar AR. Host-directed therapies for parasitic diseases. Future Med Chem. 2019;11(15):1999-2018. DOI: https://doi.org/10.4155/fmc-2018-0439

Barrow P, Dujardin JC, Fasel N, Greenwood AD, Osterrieder K, Lomonossoff G, et al. Viruses of protozoan parasites and viral therapy: Is the time now right? Virol J. 2020;17(1):142. DOI: https://doi.org/10.1186/s12985-020-01410-1

Kleandrova VV, Scotti L, Bezerra Mendonça Junior FJ, Muratov E, Scotti MT, Speck-Planche A. QSAR Modeling for Multi-Target Drug Discovery: Designing Simultaneous Inhibitors of Proteins in Diverse Pathogenic Parasite. Front Chem. 2021;9:634-63. DOI: https://doi.org/10.3389/fchem.2021.634663

Taghipour A, Olfatifar M, Rostami A, Foroutan M, Vasigala V, Norouzi M. Intestinal parasites in hemodialysis patients from developing countries: A systematic review and meta-analysis. Hemodial. Int. 2020;24(1):12-21. DOI: https://doi.org/10.1111/hdi.12796

Martínez-Flórez A, Galizzi M, Izquierdo L, Bustamante JM, Rodriguez A, Rodriguez F, et al. Repurposing bioenergetic modulators against protozoan parasites responsible for tropical diseases. Int J Parasitol Drugs Drug Resist. 2020;14:17-27. DOI: https://doi.org/10.1016/j.ijpddr.2020.07.002

Katsuno K, Burrows JN, Duncan K, Hooft van Huijsduijnen R, Kaneko T, Kita K, et al. Hit and lead criteria in drug discovery for infectious diseases of the developing world. Nat Rev Drug Discov. 2015;14(11):751-8. DOI: https://doi.org/10.1038/nrd4683

Lipinski CA, Lombardo F, Dominy BW, Feeney PJ. Experimental and Computational Approaches to Estimate Solubility and Permeability in Drug Discovery and Development Settings. Adv. Drug Deliv. Rev. 1997;23(1-3):3-25. DOI: https://doi.org/10.1016/s0169-409x(00)00129-0

Chen X, Li H, Tian L, Li Q, Luo J, Zhang Y. Analysis of the Properties of Acaricides Based on Lipinski's Rule of Five. J Comput Biol. 2020;27(9):1397-406. DOI: https://doi.org/10.1089/cmb.2019.0323

Zhong HA, Mashinson V, Woolman TA, Zha M. Understanding the molecular properties and metabolism of top prescribed drugs. Curr Top Med Chem. 2013;13(11):1290-307. DOI: https://doi.org/10.2174/15680266113139990034

Abad-Zapatero C. A sorcerer's apprentice and The Rule of Five: from rule-of-thumb to commandment and beyond. Drug Discov Today. 2007;12:995-7. DOI: https://doi.org/10.1016/j.drudis.2007.10.022

Walters WP. Going further than Lipinski's rule in drug design. Expert Opin Drug Discov. 2012;7(23-24):99-107. DOI: https://doi.org/10.1517/17460441.2012.648612

Cohen BE, Bangham AD. Diffusion of small non-electrolytes across liposome membranes. Nature. 1972;236(5343):173-74. DOI: https://doi.org/10.1038/236173a0

Pardridge WM. Transport of small molecules through the blood-brain barrier: biology and methodology. Adv Drug Deliv Rev. 1995;15(1-3):5-36. DOI: https://doi.org/10.1016/0169-409X(95)00003-P

Navia MA, Chaturvedi PR. Design principles for orally bioavailable drugs. Drug Discov Today. 1996;1(5):179-89. DOI: https://doi.org/10.1016/1359-6446(96)10020-9

Jayawardene KLTD, Palombo EA, Boag, PR. Natural Products Are a Promising Source for Anthelmintic Drug Discovery. Biomolecules. 2021;11(10):1457. DOI: https://doi.org/10.3390/biom11101457

Sasidharan S, Saudagar P. Leishmaniasis: where are we and where are we heading? Parasitol Res. 2021;120(5):1541-54. DOI: https://doi.org/10.1007/s00436-021-07139-2

Santana W, de Oliveira SSC, Ramos MH, Santos ALS, Dolabella SS, Souto EB, et al. Exploring Innovative Leishmaniasis Treatment: Drug Targets from Pre-Clinical to Clinical Findings. Chem. Biodiver. 2021;18(9):e2100336. DOI: https://doi.org/10.1002/cbdv.202100336

Lipinski CA. Lead- and drug-like compounds: the rule-of-five revolution. Drug Discov Today Technol. 2004;1(4):337-41. DOI: https://doi.org/10.1016/j.ddtec.2004.11.007

Pajouhesh H, Lenz GR. Medicinal Chemical Properties of Successful Central Nervous System Drugs. NeuroRx. 2005;2(4):541-53. DOI: https://doi.org/10.1602/neurorx.2.4.541

Scannell JW, Blanckley A, Boldon H, Warrington B. Diagnosing the decline in pharmaceutical R&D efficiency. Nat Rev Drug Discov. 2012;11(3):191-200. DOI: https://doi.org/10.1038/nrd3681

McKerrow JH, Lipinski CA. The rule of five should not impede anti-parasitic drug development. Int J Parasitol Drugs Drug Resist. 2017;7(2):248-9. DOI: https://doi.org/10.1016/j.ijpddr.2017.05.003

Published

2024-12-27

How to Cite

1.
González González A, Gille L, Monzote Fidalgo L. Physicochemical Properties of Conventional Antiparasitic Drugs Based on Lipinski’s Rule of Five. Rev Cuba Med Tropical [Internet]. 2024 Dec. 27 [cited 2025 Feb. 22];76. Available from: https://revmedtropical.sld.cu/index.php/medtropical/article/view/1040

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